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WikiPathways Webservices

OpenAPI apis-guru
Homepage
https://api.apis.guru/v2/specs/wikipathways.org/1.0.json
Provider
wikipathways.org
OpenAPI version
3.0.0
Spec (JSON)
https://api.apis.guru/v2/specs/wikipathways.org/1.0/openapi.json
Spec (YAML)
https://api.apis.guru/v2/specs/wikipathways.org/1.0/openapi.yaml

Tools (29)

Extracted live via the executor SDK.

  • allFunctions.getFindPathwaysByText

    findPathwaysByText

  • allFunctions.getFindPathwaysByXref

    findPathwaysByXref

  • allFunctions.getGetColoredPathway

    getColoredPathwayGet a colored image version of the pathway.

  • allFunctions.getGetCurationTagHistory

    getCurationTagHistory

  • allFunctions.getGetCurationTags

    getCurationTagsGet all curation tags for the given tag name. Use this method if you want to find all pathways that are tagged with a specific curation tag.

  • allFunctions.getGetCurationTagsByName

    getCurationTagsByNameGet all curation tags for the given tag name. Use this method if you want to find all pathways that are tagged with a specific curation tag.

  • allFunctions.getRemoveCurationTag

    removeCurationTagRemove a curation tag from a pathway.

  • allFunctions.getSaveCurationTag

    saveCurationTag

  • allFunctions.postCreatePathway

    createPathwayCreate a new pathway on the wiki with the given GPML code.
    Note: To create/modify pathways via the web service, you need to have an account with web service write permissions. Please contact us to request write access for the web service.

  • download.getGetPathwayAs

    getPathwayAsDownload a pathway in the specified file format.

  • download.getGetXrefList

    getXrefList

  • history.getGetPathwayHistory

    getPathwayHistoryGet the revision history of a pathway.

  • history.getGetRecentChanges

    getRecentChangesGet the recently changed pathways.
    Note: the recent changes table only retains items for a limited time (2 months), so there is no guarantee that you will get all changes when the timestamp points to a date that is more than 2 months in the past.

  • organismList.getListOrganisms

    listOrganisms

  • pathwayInformation.getGetOntologyTermsByPathway

    getOntologyTermsByPathway

  • pathwayInformation.getGetPathway

    getPathway

  • pathwayInformation.getGetPathwayInfo

    getPathwayInfoGet some general info about the pathway, such as the name, species, without downloading the GPML.

  • pathwayList.getGetPathwaysByOntologyTerm

    getPathwaysByOntologyTerm

  • pathwayList.getGetPathwaysByParentOntologyTerm

    getPathwaysByParentOntologyTerm

  • pathwayList.getListPathways

    listPathways

  • search.getFindInteractions

    findInteractionsFind interactions defined in WikiPathways pathways.

  • search.getFindPathwaysByLiterature

    findPathwaysByLiterature

  • userManagement.getGetUserByOrcid

    getUserByOrcid

  • userManagement.getLogin

    loginStart a logged in session, using an existing WikiPathways account. This function will return an authentication code that can be used to excecute methods that need authentication (e.g. updatePathway).

  • writeCreateUpdateDelete.getRemoveOntologyTag

    removeOntologyTag

  • writeCreateUpdateDelete.getSaveOntologyTag

    saveOntologyTag

  • writeCreateUpdateDelete.getUpdatePathway

    updatePathwayUpdate a pathway on the wiki with the given GPML code.
    Note: To create/modify pathways via the web service, you need to have an account with web service write permissions. Please contact us to request write access for the web service.

  • openapi.previewSpec

    Preview an OpenAPI document before adding it as a source

  • openapi.addSource

    Add an OpenAPI source and register its operations as tools