warwick.ac.uk – enterobase

OpenAPI apis-guru open_data

API for EnteroBase ()

EnteroBase is a user-friendly online resource, where users can upload their own sequencing data for de novo assembly by a stream-lined pipeline. The assemblies are used for calling MLST and wgMLST patterns, allowing users to compare their strains to publically available genotyping data from other EnteroBase users, GenBank and classical MLST databases.

Click here to find how to get and use an API token:

Homepage: https://api.apis.guru/v2/specs/warwick.ac.uk:enterobase/v2.0.json
Provider: warwick.ac.uk:enterobase / enterobase
OpenAPI version: 2.0
Spec (JSON): https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/openapi.json
Spec (YAML): https://api.apis.guru/v2/specs/warwick.ac.uk/enterobase/v2.0/openapi.yaml

Tools (28)

Extracted live via the executor SDK.

alleles.getApiV20DatabaseSchemeAlleles

Alleles data
assemblies.getApiV20DatabaseAssemblies

Genome assemblies
assemblies.getApiV20DatabaseAssembliesBarcode

Genome assemblies
assemblies.postApiV20DatabaseAssembliesBarcode

Genome assemblies
assemblies.putApiV20DatabaseAssembliesBarcode

Genome assemblies
info.getApiV20

Top level information about EnteroBase databases
loci.getApiV20DatabaseSchemeLoci

Loci
login.getApiV20Login

Login endpoint, refresh your API token
lookup.getApiV20Lookup

Generic endpoint for lookup list of barcodes
lookup.getApiV20LookupBarcode

Generic endpoint for lookup of barcodes
lookup.postApiV20LookupBarcode

Generic endpoint for lookup of barcodes
schemes.getApiV20DatabaseSchemes

Genotyping schemes
schemes.getApiV20DatabaseSchemesBarcode

Genotyping schemes
schemes.postApiV20DatabaseSchemesBarcode

Genotyping schemes
schemes.putApiV20DatabaseSchemesBarcode

Genotyping schemes
straindata.getApiV20DatabaseStraindata

Strain data
strains.getApiV20DatabaseStrains

Strain metadata
strains.getApiV20DatabaseStrainsBarcode

Strain metadata
strains.postApiV20DatabaseStrainsBarcode

Strain metadata
strains.putApiV20DatabaseStrainsBarcode

Strain metadata
strainsversion.getApiV20DatabaseStrainsversion

Strain previous metadata
sts.getApiV20DatabaseSchemeSts

ST profile data
traces.getApiV20DatabaseTraces

Traces (sequence-reads) metadata
traces.getApiV20DatabaseTracesBarcode

Traces (sequence-reads) metadata
traces.postApiV20DatabaseTracesBarcode

Traces (sequence-reads) metadata
traces.putApiV20DatabaseTracesBarcode

Traces (sequence-reads) metadata
openapi.previewSpec

Preview an OpenAPI document before adding it as a source
openapi.addSource

Add an OpenAPI source and register its operations as tools