Rat Genome Database REST API

Tools (102)

Extracted live via the executor SDK.

• agr.getAffectedGenomicModelsUsingGet

  Get affected genomic models (rat strains with gene alleles) submitted by RGD to AGR by taxonId

• agr.getAllelesForTaxonUsingGet

  Get gene allele records submitted by RGD to AGR by taxonId

• agr.getExpressionForTaxonUsingGet

  Get expression annotations submitted by RGD to AGR by taxonId

• agr.getGenesForLatestAssemblyUsingGet

  Get gene records submitted by RGD to AGR by taxonId

• agr.getPhenotypesForTaxonUsingGet

  Get phenotype annotations submitted by RGD to AGR by taxonId

• agr.getVariantsForTaxonUsingGet

  Get basic variant records submitted by RGD to AGR by taxonId

• annotation.getAnnotationCountByAccIdAndObjectTypeUsingGet

  Returns annotation count for ontology accession ID and object type

• annotation.getAnnotationCountByAccIdAndSpeciesUsingGet

  Returns annotation count for ontology accession ID and speicies

• annotation.getAnnotationCountByAccIdUsingGet

  Returns annotation count for ontology accession ID

• annotation.getAnnotationsByAccIdAndRgdIdUsingGet

  Returns a list of annotations by RGD ID and ontology term accession ID

• annotation.getAnnotationsByRgdIdAndOntologyUsingGet

  Returns a list of annotations by RGD ID and ontology prefix

• annotation.getAnnotationsByRgdIdUsingGet

  Returns a list of annotations by RGD ID

• annotation.getAnnotationsUsingGet

  Returns a list annotations for an ontology term or a term and it's children

• annotation.getAnnotationsUsingPost

  Return a list of genes annotated to an ontology term

• annotation.getAnnotsByRefrerenceUsingGet

  Returns a list of annotations for a reference

• annotation.getTermAccIdsUsingGet

  Returns a list ontology term accession IDs annotated to an rgd object

• chromosome.getChromosomeByAssemblyUsingGet

  Return a list of chromosomes

• chromosome.getChromosomesByAssemblyUsingGet

  Return a list of chromosomes

• enrichmentWebService.getEnrichmentDataUsingPost

  Return a list of genes annotated to the term.Genes are rgdids separated by comma.Species type is an integer value.term is the ontology

• enrichmentWebService.getEnrichmentDataUsingPost1

  Return a chart of ontology terms annotated to the genes.Genes are rgdids separated by comma.Species type is an integer value.Aspect is the Ontology group

• gene.getAllAnnotatedGenesUsingGet

  Return a list of genes annotated to an ontology term

• gene.getAnnotatedGenesUsingPost

  Return a list of genes annotated to an ontology term

• gene.getGeneAllelesUsingGet

  Return a list of gene alleles

• gene.getGeneByMapKeyUsingGet

  Return a list of all genes with position information for an assembly

• gene.getGeneByRgdIdUsingGet

  Get a gene record by RGD ID

• gene.getGeneBySymbolUsingGet

  Get a gene record by symbol and species type key

• gene.getGeneOrthologsUsingGet

  Return a list of gene orthologs

• gene.getGenesAnnotatedUsingGet

  Return a list of genes annotated to an ontology term

• gene.getGenesByAffyIdUsingGet

  Return a list of genes for an affymetrix ID

• gene.getGenesByAliasSymbolUsingGet

  Return a list of genes for an alias and species

• gene.getGenesByKeywordUsingGet

  Return a list of genes by keyword and species type key

• gene.getGenesByPositionUsingGet

  Return a list of genes position and map key

• gene.getGenesBySpeciesUsingGet

  Return a list of all genes for a species in RGD

• gene.getGenesInRegionUsingGet

  Return a list of genes in region

• gene.getMappedGenesByPositionUsingGet

  Return a list of genes position and map key

• gene.getOrthologsByListUsingPost

  Return a list of gene orthologs

• lookup.getEnsemblGeneMappingUsingGet

  Translate an RGD ID to an Ensembl Gene ID

• lookup.getEnsemblGeneMappingUsingPost

  Translate RGD IDs to Ensembl Gene IDs

• lookup.getEnsemblProteinMappingUsingGet

  Translate an RGD ID to an Ensembl Protein ID

• lookup.getEnsemblProteinMappingUsingPost

  Translate RGD IDs to Ensembl Protein IDs

• lookup.getEnsemblTranscriptMappingUsingGet

  Translate an RGD ID to an Ensembl Transcript ID

• lookup.getEnsemblTranscriptMappingUsingPost

  Translate RGD IDs to Ensembl Transcript IDs

• lookup.getGenBankNucleotideMappingUsingGet

  Translate an RGD ID to a GenBank Nucleotide ID

• lookup.getGenBankNucleotideMappingUsingPost

  Translate RGD IDs to GenBank Nucleotide IDs

• lookup.getGenBankProteinMappingUsingGet

  Translate an RGD ID to a GenBank Protein ID

• lookup.getGenBankProteinMappingUsingPost

  Translate RGD IDs to GenBank Protein IDs

• lookup.getGeneTypesUsingGet

  Returns a list of gene types avialable in RGD

• lookup.getGtexMappingUsingGet

  Translate an RGD ID to an GTEx ID

• lookup.getGtexMappingUsingPost

  Translate RGD IDs to GTEx IDs

• lookup.getHgncMappingUsingGet

  Translate an RGD ID to an HGNC ID

• lookup.getHgncMappingUsingPost

  Translate RGD IDs to HGNC IDs

• lookup.getMapsUsingGet

  Return a list assembly maps for a species

• lookup.getMapsUsingGet1

  Return a standardUnit for an ontology if it exists

• lookup.getMgiMappingUsingGet

  Translate an RGD ID to an MGI ID

• lookup.getMgiMappingUsingPost

  Translate RGD IDs to MGI IDs

• lookup.getNcbiGeneMappingUsingGet

  Translate an RGD ID to an NCBI Gene ID

• lookup.getNcbiGeneMappingUsingPost

  Translate RGD IDs to NCBI Gene IDs

• lookup.getSpeciesTypesUsingGet

  Return a Map of species type keys available in RGD

• lookup.getUniProtMappingUsingGet

  Translate an RGD ID to a UniProt ID

• lookup.getUniProtMappingUsingPost

  Translate RGD IDs to UniProt IDs

• map.getMapsBySpeciesUsingGet

  Return a list of assemblies

• ontology.getOntDagsUsingGet

  Returns child and parent terms for Accession ID

• ontology.getTermUsingGet

  Returns term for Accession ID

• ontology.isDescendantOfUsingGet

  Returns true or false for terms

• pathway.getPathwaysWithDiagramsForCategoryUsingGet

  Return a list of pathways based on category provided

• pathway.searchPathwaysUsingGet

  Return a list of pathways based on search term

• qtl.getMappedQtlByPositionUsingGet

  Returns a list QTL for given position and assembly map

• qtl.getQtlByRgdIdUsingGet

  Return a QTL for provided RGD ID

• qtl.getQtlListByPositionUsingGet

  Returns a list QTL for given position and assembly map

• quantitativePhenotype.getChartInfoUsingGet

  Return a list of quantitative phenotypes values based on a combination of Clinical Measurement, Experimental Condition, Rat Strain, and/or Measurement Method ontology terms. Results will be all records that match all terms submitted. Ontology ids should be submitted as a comma delimited list (ex. RS:0000029,CMO:0000155,CMO:0000139). Species type is an integer value (3=rat, 4=chinchilla). Reference RGD ID for a study works like a filter.

• quantitativePhenotype.getChartInfoUsingGet1

  Return a list of quantitative phenotypes values based on a combination of Clinical Measurement, Experimental Condition, Rat Strain, and/or Measurement Method ontology terms. Results will be all records that match all terms submitted. Ontology ids should be submitted as a comma delimited list (ex. RS:0000029,CMO:0000155,CMO:0000139). Species type is an integer value (3=rat, 4=chinchilla)

• ratStrain.getAllStrainsUsingGet

  Return all active strains in RGD

• ratStrain.getStrainByRgdIdUsingGet

  Return a strain by RGD ID

• ratStrain.getStrainsByPositionUsingGet

  Return all active strains by position

• sslp.getMappedSslpByPositionUsingGet

  Returns a list SSLP for given position and assembly map

• statistics.getActiveObjectCountUsingGet

  Count of active objects by type, for specified species and date

• statistics.getActiveObjectDiffUsingGet

  Count difference of active objects, by type, for specified species and date range

• statistics.getGeneTypeCountUsingGet

  Count of gene types, for specified species and date

• statistics.getGeneTypeDiffUsingGet

  Count difference of gene types, for specified species and date range

• statistics.getObjectStatusCountUsingGet

  Count of objects with given status, for specified species and date

• statistics.getObjectStatusDiffUsingGet

  Count difference of objects with given status, for specified species and date range

• statistics.getObjectsWithReferenceCountUsingGet

  Count of objects with reference, by object type, for specified species and date

• statistics.getObjectsWithReferenceDiffUsingGet

  Count difference of objects with reference, by object type, for specified species and date range

• statistics.getObjectsWithRefSeqCountUsingGet

  Count of objects with reference sequence(s), by object type, for specified species and date

• statistics.getObjectsWithRefSeqDiffUsingGet

  Count difference of objects with reference sequence(s), by object type, for specified species and date range

• statistics.getObjectsWithXdBsCountUsingGet

  Count of objects with external database ids, by database id, for specified species, object type and date

• statistics.getObjectsWithXdBsDiffUsingGet

  Count difference of objects with external database ids, by database id, for specified species, object type and date range

• statistics.getProteinInteractionCountUsingGet

  Count of protein interactions, for specified species and date

• statistics.getProteinInteractionDiffUsingGet

  Count difference of protein interactions, for specified species and date range

• statistics.getQtlInheritanceTypeCountUsingGet

  Count of strains, by qtl inheritance type, for specified species and date

• statistics.getQtlInheritanceTypeDiffUsingGet

  Count difference of strains, by qtl inheritance type, for specified species and date range

• statistics.getRetiredObjectCountUsingGet

  Count of retired objects by type, for specified species and date

• statistics.getRetiredObjectDiffUsingGet

  Count difference of retired objects, by type, for specified species and date range

• statistics.getStrainTypeCountUsingGet

  Count of strain types, for specified species and date

• statistics.getStrainTypeDiffUsingGet

  Count difference of strain types, for specified species and date range

• statistics.getTermStatsUsingGet

  getTermStats

• statistics.getWithdrawnObjectCountUsingGet

  Count of withdrawn objects by type, for specified species and date

• statistics.getWithdrawnObjectDiffUsingGet

  Count difference of withdrawn objects, by type, for specified species and date range

• statistics.getXdbsCountUsingGet

  Count of external database ids, for specied species and date

• statistics.getXdbsDiffUsingGet

  Count difference of external database ids, for specified species and date range

• openapi.previewSpec

  Preview an OpenAPI document before adding it as a source

• openapi.addSource

  Add an OpenAPI source and register its operations as tools